3.0 Metabolism and Metabolic Fluxes

What's New

3.3.2 Bacterial Ion Channels (EMMA L. R. COMPTON AND JOSEPH A. MINDELL) (06-01-2010)

3.3.1 Solute and Ion Transport: Outer Membrane Pores and Receptors (SATOSHI YAMASHITA AND SUSAN K. BUCHANAN) (03-31-2010)

10.2.1 Reconstruction and Use of Microbial Metabolic Networks: the Core Escherichia coli Metabolic Model as an Educational Guide (JEFFREY D. ORTH, R. M. T. FLEMING, AND BERNHARD Ø. PALSSON) (02-18-2010)

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Modules in the Works


	3.0 Metabolism and Metabolic Fluxes

3.0	Metabolism and Metabolic Fluxes	[Executive Editor, Böck]

3.1	Introduction

3.1.1	Introduction and Perspectives	[SECTION EDITOR: FREDERICK C. NEIDHARDT]
	UWE SAUER

3.1.2	Overview of Metabolic Pathways	[Section Editor, Frederick C. Neidhardt]
	August Böck

3.2	Energy Generation/Redox Control	[Section Editor, Valley Stewart

3.2.1	Energy Transduction by Ion Currents	Section Editor, Valley Stewart
	Peter Maloney

3.2.2	The Aerobic and Anaerobic Respiratory Chain of Escherichia coli and Salmonella enterica: Enzymes and Energetics	[SECTION EDITOR: VALLEY STEWART]
	GOTTFRIED UNDEN AND PIA DÜNNWALD

3.2.3	ATP Synthesis by Oxidative Phosphorylation	[SECTION EDITOR: VALLEY STEWART]
	STEVEN B. VIK

3.2.4	NADH as Donor	[SECTION EDITOR: VALLEY STEWART]
	THORSTEN FRIEDRICH AND THOMAS POHL

3.2.5	Respiration of Nitrate and Nitrite	[SECTION EDITOR: VALLEY STEWART]
	JEFFREY A. COLE AND DAVID J. RICHARDSON

3.2.6	Succinate as Donor; Fumarate as Acceptor	[SECTION EDITOR: VALLEY STEWART]
	THOMAS M. TOMASIAK, GARY CECCHINI, AND TINA M. IVERSON

3.2.7	Oxygen as Acceptor	[SECTION EDITOR: VALLEY STEWART]
	VITALIY B. BORISOV AND MICHAEL I. VERKHOVSKY

3.2.8	S- and N-Oxide Reductases	[SECTION EDITOR: VALLEY STEWART]
	VICTOR W. T. CHENG AND JOEL H. WEINER

3.2.9	Global Control of Respiratory Enzyme Synthesis	[Section Editor, Valley Stewart]

3.3	Solute and Ion Transport	[Section Editor, Peter Maloney]

3.3.1	Solute and Ion Transport: Outer Membrane Pores and Receptors	[SECTION EDITOR: PETER MALONEY]
	SATOSHI YAMASHITA AND SUSAN K. BUCHANAN

3.3.2	Bacterial Ion Channels	[SECTION EDITOR: PETER MALONEY]
	EMMA L. R. COMPTON AND JOSEPH A. MINDELL

3.3.2.1	Ammonia Transport	[SECTION EDITOR: JOHN INGRAHAM]
	NED S. WINGREEN

3.3.3	Binding Protein-Dependent Uptake of Maltose into Cells via an ATP-Binding Cassette Transporter
	Amy L. Davidson and Frances Joan D. Alvarez

3.4	Pathways to Central Metabolism: Catabolism	[Section Editor, August Böck]

3.4.1	Hexose/Pentose and Hexitol/Pentitol Metabolism	[SECTION EDITOR, AUGUST BÖCK]
	CHRISTOPH MAYER AND WINFRIED BOOS

3.4.2	Catabolism of Hexuronides, Hexuronates, Aldonates, and Aldarates	[SECTION EDITOR, AUGUST BÖCK]
	M.-A. Mandrand-Berthelot, G. Condemine, and N. Hugouvieux-Cotte-Pattat

3.4.3	Glycerol and Methylglyoxal Metabolism	[SECTION EDITOR: AUGUST BÖCK]
	IAN R. BOOTH

3.4.4	Two-Carbon Compounds and Fatty Acids as Carbon Sources	[SECTION EDITOR: AUGUST BÖCK]
	DAVID P. CLARK AND JOHN E. CRONAN

3.4.5	C4-Dicarboxylate Degradation in Aerobic and Anaerobic Growth	[SECTION EDITOR: AUGUST BÖCK]
	Gottfried Unden and Alexandra Kleefeld

3.4.6	Molecular Basis for Bacterial Growth on Citrate or Malonate	[SECTION EDITOR, AUGUST BÖCK]
	P. Dimroth

3.4.7	Catabolism of Amino Acids and Related Compounds	[SECTION EDITOR: AUGUST BÖCK]
	LARRY REITZER

3.5	Central Metabolism	Section Editor, August Böck

3.5.1	Glycolysis and Flux Control	[SECTION EDITOR: AUGUST BÖCK]
	TONY ROMEO AND JACKY L. SNOEP

3.5.2	Tricarboxylic Acid Cycle and Glyoxylate Bypass	[SECTION EDITOR: AUGUST BöCK]
	JOHN E. CRONAN, JR., AND DAVID LaPORTE

3.5.3	Fermentative Pyruvate and Acetyl-Coenzyme A Metabolism	[SECTION EDITOR, AUGUST BÖCK]
	R. Gary Sawers and David P. Clark

3.5.4	Anaerobic Formate and Hydrogen Metabolism	[SECTION EDITOR, GEORGES N. COHEN]
	R. GARY SAWERS, MELANIE BLOKESCH, AND AUGUST BÖCK

3.6	Biosynthesis	Section Editor, Wes Hatfield

3.6.1	Amino Acid Metabolism and Fluxes	[SECTION EDITOR: G. WESLEY HATFIELD]
	G. WESLEY HATFIELD

3.6.1.1	Selenocysteine	[SECTION EDITOR: GEORGES N. COHEN]
	A. Böck and M. Thanbichler

3.6.1.1.1	Selenocysteine Lyase	[Section Editor: Georges Cohen]
	Thressa C. Stadtman

3.6.1.1.2	Selenophosphate Synthetase	[SECTION EDITOR, JOHN INGRAHAM]
	Matt D. Wolfe

3.6.1.2	Regulation of Serine, Glycine, and One-Carbon Biosynthesis	[SECTION EDITOR: GEORGES COHEN]
	George V. Stauffer

3.6.1.3	Biosynthesis of Glutamate, Aspartate, Asparagine, l-Alanine, and d-Alanine	[SECTION EDITOR, GEORGES COHEN]
	Larry Reitzer

3.6.1.4	Biosynthesis of Proline	[SECTION EDITOR: GEORGES COHEN]
	LASZLO N. CSONKA AND THOMAS LEISINGER

3.6.1.5	Biosynthesis and Regulation of the Branched-Chain Amino Acids	[SECTION EDITOR: GEORGES COHEN]
	KIRSTY A. SALMON, CHIN-RANG YANG, AND G. WESLEY HATFIELD

3.6.1.6	Regulation of Glutamine Synthetase Activity	[SECTION EDITOR: GEORGES COHEN]
	EARL R. STADTMAN

3.6.1.7	Methionine	[SECTION EDITOR: GEORGES COHEN]
	ELISE R. HONDORP AND ROWENA G. MATTHEWS

3.6.1.8	Biosynthesis of the Aromatic Amino Acids	[SECTION EDITOR: WES HATFIELD]
	JAMES PITTARD AND JI YANG

3.6.1.9	Biosynthesis of Histidine	[SECTION EDITOR: WES HATFIELD]
	MALCOLM E. WINKLER AND SMIRLA RAMOS-MONTAÑEZ

3.6.1.10	Biosynthesis of Arginine and Polyamines	[SECTION EDITOR, GEORGES COHEN]
	Daniel Charlier and Nicolas Glansdorff

3.6.1.11	Biosynthesis of Cysteine	[SECTION EDITOR: GEORGES COHEN]
	NICHOLAS M. KREDICH

3.6.2	Nucleotides, Nucleosides, and Nucleobases	[SECTION EDITOR: JOHN INGRAHAM]
	KAJ FRANK JENSEN, GERT DANDANELL, BJARNE HOVE-JENSEN, AND MARTIN WILLEMOËS

3.6.3	Coenzymes, Cofactors, and Prosthetic Groups

3.6.3.1	Introduction
	Tadhg Begley

3.6.3.2	Biosynthesis of Riboflavin	Section Editor, T. Begley
	A. Bacher

3.6.3.3	Biosynthesis of Menaquinone (Vitamin K₂) and Ubiquinone (Coenzyme Q)	[SECTION EDITOR: JOHN CRONAN]
	R. MEGANATHAN AND OHSUK KWON

3.6.3.4	Biosynthesis of Pantothenic Acid and Coenzyme A	[SECTION EDITOR: JOHN CRONAN ]
	ROBERTA LEONARDI AND SUZANNE JACKOWSKI

3.6.3.5	Biotin and Lipoic Acid: Synthesis, Attachment, and Regulation	[SECTION EDITOR: T. BEGLEY]
	JOHN E. CRONAN

3.6.3.6	Folate Biosynthesis, Reduction, and Polyglutamylation and the Interconversion of Folate Derivatives	[SECTION EDITOR: AUGUST BÖCK]
	JACALYN M. GREEN AND ROWENA G. MATTHEWS

3.6.3.7	Biosynthesis of Thiamin Pyrophosphate	[SECTION EDITOR: JEREMIAH HANES]
	CHRISTOPHER T. JURGENSON, STEVEN E. EALICK, AND TADHG P. BEGLEY

3.6.3.8	Biosynthesis and Use of Cobalamin (B₁₂)	[SECTION EDITOR: T. BEGLEY]
	JORGE C. ESCALANTE-SEMERENA AND MARTIN J. WARREN

3.6.3.9	Biosynthesis of Pyridoxal-5-Phosphate
	T. Begley

3.6.3.10	Biogenesis and Homeostasis of Nicotinamide Adenine Dinucleotide Cofactor	[SECTION EDITOR: T. BEGLEY]
	ANDREI OSTERMAN

3.6.3.11	Biosynthesis of Hemes	[SECTION EDITOR: T. BEGLEY]
	SAMUEL I. BEALE

3.6.3.12	Cytochrome c Biogenesis	[SECTION EDITOR: T. BEGLEY]
	JULIE M. STEVENS AND STUART J. FERGUSON

3.6.3.13	Biosynthesis and Insertion of the Molybdenum Cofactor	[SECTION EDITOR: T. BEGLEY]
	AXEL MAGALON AND RALF R. MENDEL

3.6.3.14	From Iron and Cysteine to Iron-Sulfur Clusters: the Biogenesis Protein Machineries	[SECTION EDITOR: T. BEGLEY]
	MARC FONTECAVE, BÉATRICE PY, SANDRINE OLLAGNIER de CHOUDENS, AND FRÉDÉRIC BARRAS

3.6.4	Biosynthesis of Membrane Lipids	[SECTION EDITOR: JOHN E. CRONAN, JR.]
	JOHN E. CRONAN, JR., AND CHARLES O. ROCK